Editorials
An accident with anthrax demonstrates that pathogen research always carries a risk of release — and highlights the need for rigorous scrutiny of gain-of-function flu studies.
doi: 10.1038/510443a
Measures of research impact are improving, but universities should be wary of their limits.
doi: 10.1038/510444a
Environmentalists are divided over whether it is possible to have a ‘good’ Anthropocene.
doi: 10.1038/510444b
News
Satellite will map sources and sinks of greenhouse gas in unprecedented detail.
doi: 10.1038/510451a
Proposed innovation strategy is low on detail and commitments from governments.
doi: 10.1038/510452a
Despite a chequered history, olaparib is finally before the US Food and Drug Administration.
doi: 10.1038/510454a
Assessments by international biodiversity group aim to halt damage to world’s ecosystems.
doi: 10.1038/510455a
State creates programme to boost neuroscience innovation.
doi: 10.1038/510456a
News Features
Romance often sparks between colleagues, and scientists are no different. Nature profiles four super-couples who have combined love and the lab.
doi: 10.1038/510458a
After decades of study, researchers still can't agree on whether nutritional supplements actually improve health.
doi: 10.1038/510462a
News & Views
A means of verifying that nuclear warheads to be dismantled are genuine items has been proposed that potentially reveals no information to an inspector about the design of the weapons. Two experts explain the ins and outs of the method and its implications for arms-control policy. See Article p.497
doi: 10.1038/510476a
A naturally occurring fungal compound has been found to restore the susceptibility of bacteria to a class of antibiotic that is currently considered to be our last defence against serious infections. See Article p.503
doi: 10.1038/510477a
Published results of the gravitational constant, a measure of the strength of gravity, have failed to converge. An approach that uses cold atoms provides a new data point in the quest to determine this fundamental constant. See Letter p.518
doi: 10.1038/nature13507
Enzymes that attach amino acids to transfer RNAs during protein synthesis must recognize both substrates specifically. Crystal structures reveal a mechanism that explains the RNA specificity for one such system. See Article p.507
doi: 10.1038/nature13502
A method has been invented for determining nanoscale variations in the distribution of electric charge on surfaces. It has so far been used to examine specific inorganic materials, but could find widespread applications in imaging.
doi: 10.1038/510481a
Many enzymes form 'assembly lines' containing a series of catalytic modules. Visualization of how the structure of a module shifts during catalysis provides a clearer idea of how such enzymes work. See Article p.512 & Letter p.560
doi: 10.1038/nature13505
Review
N-heterocyclic carbenes are powerful tools in organic chemistry, with many commercially important applications; this overview describes their properties and potential uses.
doi: 10.1038/nature13384
Articles
Future rounds of nuclear arms control would ideally involve direct inspection of nuclear warheads using procedures that give inspectors high confidence about the authenticity of submitted nuclear items yet give no information about their design; this is now shown to be achievable using zero-knowledge protocols in neutron imaging of nuclear warheads.
doi: 10.1038/nature13457
The emergence of Gram-negative pathogens resistant to carbapenem antibiotics is a global health concern and carbapenem resistance often arises through acquisition of β-lactamase enzymes; this study identifies the natural fungal product aspergillomarasmine A as a metallo-β-lactamase inhibitor and a potential treatment to tackle carbapenem resistance.
doi: 10.1038/nature13445
X-ray crystal structures of a tRNA synthetase bound to wild-type and mutant alanine tRNAs reveal the structural basis for selectivity.
doi: 10.1038/nature13440
Polyketide synthases are multidomain enzymes that produce polyketides, which form the basis of many therapeutic agents; here, electron cryo-microscopy is used to establish the structure of a bacterial full-length module, and to elucidate the structural basis of both intramodule and intermodule substrate transfer.
doi: 10.1038/nature13423
Letters
Determination of the gravitational constant G using laser-cooled atoms and quantum interferometry, a technique that gives new insight into the systematic errors that have proved elusive in previous experiments, yields a value that has a relative uncertainty of 150 parts per million and which differs from the current recommended value by 1.5 combined standard deviations.
doi: 10.1038/nature13433
Single-walled carbon nanotubes of a single chirality can be produced with an abundance of more than 92 per cent when using tungsten-based bimetallic alloy nanocrystals as catalysts.
doi: 10.1038/nature13434
The isotopic composition of glacial sediment discharged into the ocean from south Greenland is used to identify a major reduction in the amount of that sediment derived from erosion of Greenland’s Precambrian bedrock, probably indicating the cessation of subglacial erosion and sediment transport during Marine Isotope Stage 11 as a result of the almost complete deglaciation of south Greenland.
doi: 10.1038/nature13456
Recordings from monkeys during motor learning suggest that durations of complex-spike (CS) responses to climbing-fibre inputs are meaningful signals correlated across the Purkinje-cell population during motor learning; longer climbing-fibre bursts lead to longer-duration CS responses, larger synaptic depression and stronger learning, thus forming a graded instruction.
doi: 10.1038/nature13282
Here human embryonic stem cell lines are derived by somatic cell nuclear transfer from cells of a newborn and from skin cells of an adult, a female with type 1 diabetes; the stem cells produced are pluripotent and can be differentiated into insulin-producing beta cells.
doi: 10.1038/nature13287
Medulloblastoma is a malignant childhood brain tumour presenting major clinical challenges; here, a comprehensive genome-wide DNA methylation data set from human and mouse tumours, coupled with analysis of histone modifications, RNA transcripts and genome sequencing, uncovers a wealth of alterations that provide insights into the epigenetic regulation of transcription and genome organization in medulloblastoma pathogenesis.
doi: 10.1038/nature13268
Metformin treatment of rats at physiologically relevant doses inhibits the redox shuttle enzyme mitochondrial glycerophosphate dehydrogenase.
doi: 10.1038/nature13270
Formation of an active cyclin D1–Cdk4 complex suppresses glucose metabolism independently of cell division.
doi: 10.1038/nature13267
Several proteins localized at membrane contact sites contain an SMP domain, which has been proposed to act as a lipid-binding module; here, the crystal structure of a fragment of the extended synaptotagmin 2 protein, including its SMP, is presented, and indicates that this protein may have a direct role in lipid transport.
doi: 10.1038/nature13269
Direct evidence for the role of BRCA1 in controlling homologous recombination at stalled replication forks has been obtained in mammalian cells using the bacterial Tus/Ter system.
doi: 10.1038/nature13295
The polyketide synthase (PKS) mega-enzyme assembly line uses a modular architecture to synthesize diverse and bioactive natural products that often constitute the core structures or complete chemical entities for many clinically approved therapeutic agents. The architecture of a full-length PKS module from the pikromycin pathway of Streptomyces venezuelae creates a reaction chamber for the intramodule acyl carrier protein (ACP) domain that carries building blocks and intermediates between acyltransferase, ketosynthase and ketoreductase active sites (see accompanying paper). Here we determine electron cryo-microscopy structures of a full-length pikromycin PKS module in three key biochemical states of its catalytic cycle. Each biochemical state was confirmed by bottom-up liquid chromatography/Fourier transform ion cyclotron resonance mass spectrometry. The ACP domain is differentially and precisely positioned after polyketide chain substrate loading on the active site of the ketosynthase, after extension to the β-keto intermediate, and after β-hydroxy product generation. The structures reveal the ACP dynamics for sequential interactions with catalytic domains within the reaction chamber, and for transferring the elongated and processed polyketide substrate to the next module in the PKS pathway. During the enzymatic cycle the ketoreductase domain undergoes dramatic conformational rearrangements that enable optimal positioning for reductive processing of the ACP-bound polyketide chain elongation intermediate. These findings have crucial implications for the design of functional PKS modules, and for the engineering of pathways to generate pharmacologically relevant molecules.
doi: 10.1038/nature13409