Methods Articles

Editorial: Find them early

Getting young researchers into independent positions that encourage risk-taking would benefit science but requires more than targeted individual research grants.

Nature Methods, vol. 7 #3, pp163-163

Research Highlights: New tools to enlighten brain function

The pioneers of the first generation of widely used optogenetic tools now describe new variants that open further possibilities for studying neural function.

Nature Methods, vol. 7 #3, pp173-173

Research Highlights: Immortal strands versus silent sisters

A method to differentially label each sister chromatid in a cell makes it possible to elucidate segregation patterns after mitosis and should help to pinpoint the mechanism behind nonrandom segregation in certain cell types.

Nature Methods, vol. 7 #3, pp174-175

Research Highlights: A genome in time

Addition of next-generation sequencing to an assay of replication timing enables high-resolution genome-scale analyses of multiple cell types.

Nature Methods, vol. 7 #3, pp174-175

Research Highlights: A global map of gene function

Researchers map functional interactions for 75% of the yeast genome using synthetic genetic array methodology.

Nature Methods, vol. 7 #3, pp176-176

Research Highlights: Smart delivery with nanofactories

Researchers engineer biological 'nanofactories' that can trigger a quorum sensing response in bacteria.

Nature Methods, vol. 7 #3, pp178-178

Research Highlights: Reliably bright mice

Mice with inducible reporter genes allow systemic profiling of gene expression throughout the brain.

Nature Methods, vol. 7 #3, pp180-180

News and Views: Waltz, an exciting new move in amyloid prediction

A new amyloid-prediction tool, Waltz, offers advantages over previous amyloid-prediction tools for distinguishing 'true' amyloids from amorphous aggregates.

Nature Methods, vol. 7 #3, pp187-188

News and Views: aMAZe-ing tools for mosaic analysis in zebrafish

Mosaic analysis in zebrafish (MAZe) allows lineage tracing and analysis of mosaic animals.

Nature Methods, vol. 7 #3, pp188-190

News and Views: The electronic crystal ball: predicting cell fate from time-lapse data

Prospective isolation of defined cell types is a crucial prerequisite for their molecular analysis, but the heterogeneity of populations yielded by current protocols obscures relevant information. New studies now use additional features from time-resolved imaging data for live prospective identification of cells with defined future behavior.

Nature Methods, vol. 7 #3, pp190-191

Brief Communication: A nonviral minicircle vector for deriving human iPS cells

Simple minicircle vectors carrying four reprogramming factors induce pluripotency in adult human adipose stem cells and in neonatal fibroblasts without integration into the genome.

Nature Methods, vol. 7 #3, pp197-199

Brief Communication: In-cell recordings by extracellular microelectrodes

Conventional extracellular electrode recordings are generally limited to monitoring action potentials. But use of extracellular gold microelectrodes with microspines that are engulfed by a neuron generates efficient electrical coupling and allows detection of both action potentials and subthreshold synaptic potentials with a signal-to-noise ratio similar to that of conventional intracellular recordings.

Nature Methods, vol. 7 #3, pp200-202

Brief Communication: Detecting the conformation of individual proteins in live cells

Single-molecule fluorescence resonance energy transfer (smFRET) is applied in live cells and reveals the conformational changes of individual SNARE proteins upon entering a SNARE complex.

Nature Methods, vol. 7 #3, pp203-205

Brief Communication: Organelle-specific, rapid induction of molecular activities and membrane tethering

Chemically inducible dimerization probes selectively target proteins to the surface of specific organelles or tether organelles to each other, thus allowing precise spatiotemporal analysis of signaling events.

Nature Methods, vol. 7 #3, pp206-208

Brief Communication: Temporal pixel multiplexing for simultaneous high-speed, high-resolution imaging

By subdividing a charge-coupled device (CCD) array into subgroups using a digital micromirror device and offsetting exposure times, temporal pixel multiplexing allows simultaneous high-speed and high-resolution imaging using a single CCD. This imaging modality allows 250 Hz microscopic imaging of fast cellular responses with a 10-Hz 1.3 megapixel camera

Nature Methods, vol. 7 #3, pp209-211



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