Editorials
p.391
Scientists in the United States and elsewhere ought to address the needs and employment prospects of taxpayers who have seen little benefit from scientific advances.
doi: 10.1038/542391a
p.392
A proposal to massively expand the number of bodies called planets raises interesting questions.
doi: 10.1038/542392b
p.392
The European Union is dragging its feet on gene-editing rules and scientists should push the issue.
doi: 10.1038/542392a
News
p.399
Maximum-security biolab is part of plan to build network of BSL-4 facilities across China.
doi: 10.1038/nature.2017.21487
p.401
The US Patent and Trademark Office issues a verdict in legal tussle over rights to genome-editing technology.
doi: 10.1038/nature.2017.21502
p.402
Rift through Larsen C ice shelf has grown to 175 kilometres, and collapse of nearby ice shelves could offer a glimpse of its future.
doi: 10.1038/nature.2017.21507
p.403
Policy experts want scientists at the table when government decides on environmental protection and membership of international collaborations.
doi: 10.1038/nature.2017.21511
p.404
A host of detailed cell atlases could revolutionize understanding of cancer and other diseases.
doi: 10.1038/nature.2017.21508
p.404
DNA of 500-year-old bacteria is first direct evidence of an epidemic — one of humanity's deadliest — that occurred after Spanish conquest.
doi: 10.1038/nature.2017.21485
News Features
p.406
How rediscovered chemical tags on DNA and RNA are shaking up the field.
doi: 10.1038/542406a
News & Views
p.418
A systematic analysis of bipolar cells, which act as a central signalling conduit in the retina, reveals that the neurons' diverse responses to light are generated largely by feedback from neighbouring amacrine cells. See Article p.439
doi: 10.1038/nature21498
p.419
Statistical analysis has revealed a simple rule for the occurrence of warm periods during the Quaternary, whereas on much longer timescales geological data have confirmed that the Solar System is chaotic. See Article p.427 & Letter p.468
doi: 10.1038/542419a
p.420
Optimal protein synthesis requires bases in transfer RNAs to be modified. A key modification has been shown to involve an unusual two-step mechanism that entails the sequential activities of two enzymes. See Letter p.494
doi: 10.1038/542420a
p.421
Seven small planets whose surfaces could harbour liquid water have been spotted around a nearby dwarf star. If such a configuration is common in planetary systems, our Galaxy could be teeming with Earth-like planets. See Letter p.456
doi: 10.1038/542421a
p.423
Chemists have long aspired to synthesize two-dimensional polymers that are fully conjugated — an attribute that imparts potentially useful properties. Just such a material has been prepared using a solid-state polymerization reaction.
doi: 10.1038/nature21503
p.424
It emerges that blood-cancer-targeting drugs that block a tumour-survival pathway also activate a mutation-causing enzyme in mice and in human cells. This might have implications for the clinical use of these drugs. See Letter p.489
doi: 10.1038/nature21504
Articles
p.427
A simple model, based on only summer insolation energy and time since the previous deglaciation, correctly predicts the deglaciation history of the past 2.6 million years, including the change in frequency of glacial–interglacial cycles about one million years ago.
doi: 10.1038/nature21364
p.433
Whole-exome analysis of individuals with developmental disorders shows that de novo mutations can equally cause loss or altered protein function, but that most mutations causing altered protein function have not yet been described.
doi: 10.1038/nature21062
p.439
The functional diversity of bipolar cells, which split visual inputs into different excitatory channels within the retina, arises from centre–surround interactions in their receptive fields that tune both spatial and temporal signalling.
doi: 10.1038/nature21394
p.445
Immunization with Plasmodium falciparum sporozoites under chemoprophylaxis can protect against controlled human malaria infection with the same strain for at least 10 weeks, and protection correlates with polyfunctional T-cell memory.
doi: 10.1038/nature21060
p.450
Adipose tissue is a major source of circulating exosomal miRNAs, which contribute to the regulation of gene expression in distant tissues and organs.
doi: 10.1038/nature21365
Letters
p.456
Last year, three Earth-sized planets were discovered to be orbiting the nearby Jupiter-sized star TRAPPIST-1; now, follow-up photometric observations from the ground and from space show that there are at least seven Earth-sized planets in this star system, and that they might be the right temperature to harbour liquid water on their surfaces.
doi: 10.1038/nature21360
p.461
Suitably engineered mechanical metamaterials show static non-reciprocity—that is, the transmission of motion from one side to the other depends on the direction of that motion.
doi: 10.1038/nature21044
p.465
Nitrogen isotope data from sediments deposited during the earliest stage of the Great Oxidation Event show evidence for the emergence of a pervasive aerobic marine nitrogen cycle.
doi: 10.1038/nature20826
p.468
Cretaceous astrochronologic evidence reveals a resonance transition associated with the orbits of Mars and the Earth, confirming predicted chaotic Solar System behaviour and enabling an improvement in the geological timescale.
doi: 10.1038/nature21402
p.471
Presence of a radula in Calvapilosa kroegeri confirms the molluscan affinity of sachitids, and the single shell plate reveals the ancestral condition for all crown molluscs and early evolution of the multi-plated body plan characteristic of Aculifera.
doi: 10.1038/nature21055
p.475
The maternal-to-zygotic transition (MZT) is one of the most profound and tightly orchestrated processes during the early life of embryos, yet factors that shape the temporal pattern of vertebrate MZT are largely unknown. Here we show that over one-third of zebrafish maternal messenger RNAs (mRNAs) can be N6-methyladenosine (m6A) modified, and the clearance of these maternal mRNAs is facilitated by an m6A-binding protein, Ythdf2. Removal of Ythdf2 in zebrafish embryos decelerates the decay of m6A-modified maternal mRNAs and impedes zygotic genome activation. These embryos fail to initiate timely MZT, undergo cell-cycle pause, and remain developmentally delayed throughout larval life. Our study reveals m6A-dependent RNA decay as a previously unidentified maternally driven mechanism that regulates maternal mRNA clearance during zebrafish MZT, highlighting the critical role of m6A mRNA methylation in transcriptome switching and animal development.
doi: 10.1038/nature21355
p.479
The B-lymphoid transcription factors PAX5 and IKZF1 restrict the supply of glucose and energy to B cells to levels that are not enough to fuel a driver-oncogene, thereby acting as tumour suppressors and sensitizing acute lymphoblastic leukaemia B cells to glucocorticoid therapy.
doi: 10.1038/nature21076
p.484
The gene CHD1 is synthetic essential in PTEN-deficient prostate and breast cancers.
doi: 10.1038/nature21357
p.489
Activation-induced cytidine deaminase (AID) is a B-cell-specific enzyme that targets immunoglobulin genes to initiate class switch recombination and somatic hypermutation. In addition, through off-target activity, AID has a much broader effect on genomic instability by initiating oncogenic chromosomal translocations and mutations involved in the development and progression of lymphoma. AID expression is tightly regulated in B cells and its overexpression leads to enhanced genomic instability and lymphoma formation. The phosphatidylinositol 3-kinase δ (PI3Kδ) pathway regulates AID by suppressing its expression in B cells. Drugs for leukaemia or lymphoma therapy such as idelalisib, duvelisib and ibrutinib block PI3Kδ activity directly or indirectly, potentially affecting AID expression and, consequently, genomic stability in B cells. Here we show that treatment of primary mouse B cells with idelalisib or duvelisib, and to a lesser extent ibrutinib, enhanced the expression of AID and increased somatic hypermutation and chromosomal translocation frequency to the Igh locus and to several AID off-target sites. Both of these effects were completely abrogated in AID-deficient B cells. PI3Kδ inhibitors or ibrutinib increased the formation of AID-dependent tumours in pristane-treated mice. Consistently, PI3Kδ inhibitors enhanced AID expression and translocation frequency to IGH and AID off-target sites in human chronic lymphocytic leukaemia and mantle cell lymphoma cell lines, and patients treated with idelalisib, but not ibrutinib, showed increased somatic hypermutation in AID off-targets. In summary, we show that PI3Kδ or Bruton’s tyrosine kinase inhibitors increase genomic instability in normal and neoplastic B cells by an AID-dependent mechanism. This effect should be carefully considered, as such inhibitors can be administered to patients for years.
doi: 10.1038/nature21406
p.494
The C-to-U deamination at position 32 of tRNAThr in Trypanosoma brucei requires two enzymatic activities and proceeds via formation of a 3-methylcytosine intermediate, supporting the notion of a coupled modification system.
doi: 10.1038/nature21396
p.498
The near-complete in vitro reconstitution of the mitotic spindle assembly checkpoint reveals how the assembly of its effector, the mitotic checkpoint complex, is catalysed.
doi: 10.1038/nature21384